PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142859001
Common NameGSBRNA2T00142859001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 334aa    MW: 37125.3 Da    PI: 7.5002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142859001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv ++k++G+g+W++++   g+ R+ k+c++rw +yl
  GSBRNA2T00142859001 14 KGPWTPEEDIILVTYIKEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                         79******************************99************97 PP

2Myb_DNA-binding50.16.3e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+ E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSBRNA2T00142859001  67 RGNFTEHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                          89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.012965IPR017930Myb domain
SuperFamilySSF466892.68E-3011108IPR009057Homeodomain-like
SMARTSM007178.7E-151363IPR001005SANT/Myb domain
PfamPF002496.9E-161461IPR001005SANT/Myb domain
CDDcd001672.93E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2465117IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.44566116IPR017930Myb domain
PfamPF002493.3E-1467112IPR001005SANT/Myb domain
CDDcd001671.80E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVRPPCCDKG GVKKGPWTPE EDIILVTYIK EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKAN  120
QDSHQDFDQS RDLSSSPSSS SANSNSNISR GQWERRLQTD IHLAKKALSE ALSPAVAPII  180
TSTFATTATT SSSAESRRST SSACRFLRTQ ETSTAYASST ENIAKLLKGW VKNSPKIPNS  240
SDLMVSPDSE TKDVIKSDVE DCAGEFQSFS GFDHLKDCDS SYHQAGVSPD HETKPDITGC  300
SNQSQWSLFE KWLFEDSGGP IGDIVLDENP YFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1msf_C7e-25141164105C-Myb DNA-Binding Domain
1mse_C7e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.24870.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142859001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529560.0AK352956.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151834.10.0PREDICTED: myb-related protein 306
SwissprotQ9SCU70.0MYB30_ARATH; Transcription factor MYB30
TrEMBLA0A078D8000.0A0A078D800_BRANA; BnaC07g25380D protein
STRINGBra025361.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58422348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-179myb domain protein 30
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]